Author: Avery Rosen

  • MongoDB Replication Pro-tips: Reporting Instances

    MongoDB Replication Pro-tips: Reporting Instances

    Any shop that has a DevOps culture, and that has MongoDB backed applications, uses replica sets… not just for production applications, but for those still in the prototyping phase. Replication is critical for uptime, so your Ops team has been working with your Devs all through the development of your project, and you didn’t defer a replication strategy until after you had a working app.

    Nor did you neglect to plan for your reporting needs. It is a given that beyond running your app, you need to get analytics on user behavior, general use, and other business-specific metrics. You can’t just run reports against your live database, (for reasons I detail below, in case they are not yet obvious to you). In your DevOps shop, developers and admins discussed, at the inception of the project, the plan for sequestering reporting tasks so that they do not interfere with production tasks.

    Keeping Reporting Reads Away From Production

    Limiting reporting queries to dedicated nodes is a canonical example, used all over the MongoDB replication documentation. Reporting does not require writes, and permits eventually consistent data. Daily summaries do not suffer if they are derived from data which is seconds or minutes stale. It does not change the fundamental meaning of user behavior reports if your counts are missing a few actions, and some tallies are slightly misaligned.

    But why is it so important to take advantage of this?

    Aside: The Problem With Mingling Production and Analytics

    Skip this section if this is already a no-brainer for you. If you want some background, read on.

    Consider the working set, the subset of your entire database that MongoDB reads from and writes to over any given time span. Your production environment will have a set of active users, and the documents pertaining to their data will be what the OS attempts to keep in physical memory.

    (Do not let your working set grow larger than RAM! If it’s heading there, you need to shard, so capacity planning is critical. But that’s a separate lesson. Monitor your instances with MongoDB’s free monitoring servicee, and maybe take an upcoming webinar in capacity planning.)

    Even if your database is hundreds or thousands of times the size of your available memory, if you have planned your schema and indices well, MongoDB will run efficiently because the data outside the working set can remain untouched on disk. As users become idle, their documents will fall out of use, and the RAM they occupy will become available to contain documents for new active users.

    Reporting jobs, though, read a wide range of data, do not visit the same data repeatedly, and each reporting task may address completely different data sets. On any database of decent size, this means these jobs require constant ejection of recently used documents from RAM to make room for new documents to be read. If you run these jobs on the same instance that is backing your production work load, your reporting jobs will fight with your production apps for RAM footprint, continuously ejecting your live users’ data, while your app continuously reloads it. Congratulations, you have built a thrashing machine.

    Replica Sets With Dedicated Reporting Instances

    You can build dedicated reporting nodes atop MongoDB replication by taking advantage of hidden replica set members, or tag sets in concert with read preferences. The first method is simpler, the second is more flexible.

    Reviewing MongoDB Replica Sets

    MongoDB Replica Sets create uptime durability by replicating data to all the nodes in a set, and providing seamless fail-over to clients. They contain one primary node that allows writes, while the rest are read-only secondaries. They manage among themselves which is primary, holding elections to determine which node should be primary when conditions require. Replica sets should contain an odd number of members to facilitate rapid elections without ties.

    It is fundamentally not knowable whether unreachable machines are down or if the network has been partitioned, so if a majority of the nodes in a replica set go offline (say, 2 out of a 3-member set), even if a healthy primary remains, it will step down to a read-only secondary. Not doing so could lead to multiple machines declaring themselves primary in the case of a network partition, and horrific data inconsistencies.

    Thus a replica set contains a minimum of 3 members, providing a fault tolerance of one machine failure.

    Reporting Instance, Hidden Member

    Hidden members of a replica set are configured to be priority: 0, to prevent them from ever being elected primary, and to be hidden: true, which prevents clients connected to the replica set from routing reads to it, even if they specify a read preference of secondary.

    To read from this hidden member, you will use a standalone connection, rather than the MongoReplicaSetClient type, and specify slave_ok.

    Hidden Member Setup

    We can use the mongo shell to hide a member of an existing replica set:

    # connect to primary directly
    Kusanagi:~ avery$ mongo --port 29019
    MongoDB shell version: 2.4.3
    connecting to: 127.0.0.1:29019/test
    
    // using my local replica set playground
    PRIMARY> conf = rs.config()
    {
        "_id" : "test",
        "version" : 21,
        "members" : [
            {
                "_id" : 0,
                "host" : "Kusanagi.local:29017",
            },
            {
                "_id" : 1,
                "host" : "Kusanagi.local:29018",
            },
            {
                "_id" : 2,
                "host" : "Kusanagi.local:29019",
            }
        ]
    }
    
    // we'll use members[1], the instance on port 29018
    PRIMARY> conf.members[1].priority = 0
    PRIMARY> conf.members[1].hidden = true
    PRIMARY> conf.version += 1
    PRIMARY> rs.reconfig(conf)
    Tue Apr  1 12:24:34.045 DBClientCursor::init call() failed
    Tue Apr  1 12:24:34.046 trying reconnect to 127.0.0.1:29019
    Tue Apr  1 12:24:34.047 reconnect 127.0.0.1:29019 ok
    reconnected to server after rs command (which is normal)

    Kusanagi.local:29018 is now hidden. It will continue to replicate and vote in elections as usual, but clients connecting to the replica set will never read from it, even if Kusanagi.local:29019 is taken down:

    irb(main):012:0> rs = Mongo::MongoReplicaSetClient.new(["Kusanagi.local:29017", "Kusanagi.local:29018", "Kusanagi.local:29019"])
    => <Mongo::MongoReplicaSetClient:0x3fe06e4fe564 @seeds=[["Kusanagi.local", 29017], ["Kusanagi.local", 29018], ["Kusanagi.local", 29019]] @connected=true>
    irb(main):013:0> rs.primary
    => ["Kusanagi.local", 29017]
    irb(main):014:0> rs.secondaries
    => #<Set: {}>
    # an empty set -- as far as this connection is concerned, there are no secondaries.

    Reporting code would look like this (in Ruby):

    require 'mongo'
    reporting = Mongo::MongoClient.new("Kusanagi.local", "29018", slave_ok: true)
    
    # error checking goes here
    
    reporting['my_application']['users'].aggregate(...)

    Considerations

    Using a hidden member is the simplest way to set up an instance for a dedicated workload such as reporting, however:

    Hidden Members Cannot Be Read From In Case of Emergency

    With 2 ordinary and one hidden member in a replica set, fault tolerance for writing is identical to a regular 3-member set. However, should you lose two nodes, your production application will not be able to gracefully degrade to read-only mode, because your hidden member will not allow replica set client reads. If you just like the simplicity of a hidden member, and cost is not an issue, use a 5-member set (with one member hidden) instead.

    Wrapper Code for Replica Sets Cannot Be Used

    Many teams create application-specific wrappers to add infrastructure knowledge to the clients provided by MongoDB drivers. Since you need to address your reporting instance with a stand-alone connection, you will not be able to reuse this investment, which will make you sad.

    Reporting Instance, Tagged Member

    The more complex, but flexible, method for routing reporting queries to a dedicated node is to use tagging and read preferences.

    As with the hidden member, set one member to priority: 0, but do not set it to be hidden. Instead, assign a tag of use: reporting:

    PRIMARY> conf = rs.config()
    {
        "_id" : "test",
        "version" : 21,
        "members" : [
            {
                "_id" : 0,
                "host" : "Kusanagi.local:29017",
            },
            {
                "_id" : 1,
                "host" : "Kusanagi.local:29018",
            },
            {
                "_id" : 2,
                "host" : "Kusanagi.local:29019",
            }
        ]
    }
    
    // we'll use members[1], the instance on port 29018
    PRIMARY> conf.members[1].priority = 0
    PRIMARY> conf.members[1].tags = { "use": "reporting" }
    PRIMARY> conf.version += 1
    PRIMARY> rs.reconfig(conf)
    [...]

    As before, Kusanagi.local:29018 will never become primary; however, in the case that the other two machines become unreachable, your application will be able to issue reads to the reporting server. It should go without saying that your reporting should be suspended during such an event.

    Your reporting code will look something like this (in Python, this time):

    from pymongo import MongoReplicaSetClient
    from pymongo.read_preferences import ReadPreference
    
    rep_set = MongoReplicaSetClient(
        'Kusanagi.local:29017,Kusanagi.local:29018,Kusanagi.local:29019',
        replicaSet = 'test',
        read_preference = ReadPreference.SECONDARY,
        tag_sets = [{'use':'reporting'}]
    )
    # check to ensure we're not running reporting against the sole remaining secondary
    if rep_set.primary is not None:
        rep_set.my_application.users.aggregate(...)

    The above will only send reporting queries to secondaries tagged use: reporting, and it guards against running at all if there is no available primary. In practice, you should throw exceptions and handle them in your escalation code if you find no primaries! Better still, your monitoring could set runtime-available values so you can branch on, for example, reporting_system.ok().

    Benefits and Considerations

    Using tags and read preferences allows a few degrees of flexibility that are not possible with hidden members.

    Reporting Instances Can Be Easily Added

    Because your connection code is declarative, rather than specific to a particular host, to add more nodes for reporting jobs, just add them and tag them, like so:

    PRIMARY> rs.add({_id:3, host:"Kusanagi.local:29020", priority:0, tags:{'use':'reporting'}})

    Your existing code will make use of the new capacity, and the replica set will continue operating without triggering an election and disconnecting your clients.

    Reporting Instances Can Be Shifted or Dropped

    The reporting tag can be moved, or even removed if you need to offer read bandwidth to other jobs in a pinch. A reconfiguration like this will trigger an election and disconnect all your clients, but this is no worse than any other option. Note: It is an anti-pattern to increase your general capacity by distributing production reads to secondaries. This is only an emergency measure.

    Some Drivers Require Manual Sync

    The Ruby driver (as of 1.9.2), for example, does not refresh its view of the replica set unless the client is initialized explicitly to do so with refresh_mode: :sync. Check your driver documentation.

    Conclusion

    Simple replication setup has been one of my favorite operational aspects of MongoDB since its introduction pre–1.0, when it made MySQL replication look like something out of the stone age. It was a little rough around the edges back then, but has truly come into its own. Whether you use tag sets or hidden members, building a reporting infrastructure atop MongoDB’s replication features simplifies operations, letting you focus on building a great application.

  • MongoDB Needs and Loves DevOps

    MongoDB Needs and Loves DevOps

    DevOps is about more than just running infrastructure smarter, with more automation. It’s a means to engineering agile, robust, and modern software by blending the traditionally siloed areas of administration and development. This means infrastructure as code, and developer concern for operations. It means more than calling sysadmins “DevOps Engineers”; it means operators and developers working together seamlessly. NoSQL in general is a solution that by it’s nature loves DevOps, and it thrives under teams that take a DevOps approach, but it can really hurt you if you do not. MongoDB is no exception to this rule. It has gained enormous traction in the developer community by blending flexibility, features, and performance. Some teams have been seduced by the ease with which they set up MongoDB for development, and neglect to think about capacity planning, tuning, monitoring, and maintenance. Do not let this happen to you! Or you will pay the price at 3am when you are scrambling to figure out why your swell app has ground to a halt. Instead, take the time to learn MongoDB’s needs and capabilities, because it doesn’t just make development easy, it can truly sweeten operations with things like hassle-free replication and full access to administrative tasks via the same API used to perform data access. Let’s have a look at MongoDB from a DevOps perspective.

    DevOps Wants:

    Clueful administrators.

    There isn’t much room in the DevOps movement for system administrators who don’t speak at least one high-level language. I personally find Ruby most appealing to to me for systems programming, but Python is also a fine choice. MongoDB admins should be practiced at performing administrative tasks in both the javascript shell and the programming language of their choice, setting the stage for a rich infrastructure monitoring and automating codebase. Administration best practices are extensively, if not exhaustively, documented in the administration docs, so start there. Pay particular attention to the Operational Strategies section of the manual, which provides a checklist of concerns you should address as you plan your system’s design and deployment.

    Developers who know the ramifications of their infrastructure.

    The age of throwing applications over the wall to operations is mercifully drawing to a close. Developers must understand the nature of their infrastructure, how to best utilize it, and how it handles failures. MongoDB affords developers the ability to code to infrastructure details without coupling to particular instances, or even hostnames. In this, tags, write concerns, and read preferences are your friends. Code that runs reports (which should be kept away from your production instances) can specify that it will read only from instances tagged as “reporting”. Admins can add instances tagged as ‘reporting’, or swap which instances have that tag, with a few lines of code. Refer to the end of this article for example code.

    Infrastructure state to alert cleanly, and for trends to be visualized.

    The MongoDB Monitoring manual section provides an overview of the ways to monitor your instances, including 3rd party solutions, both self-hosted and SaaS. MongoDB Management Service is MongoDB, Inc.’s free monitoring, trending, and alerting service, which you should set up from day one to monitor every single instance you rely on.

    Infrastructure to be programmable.

    Ok, you are monitoring your instances, why not work on automating your infrastructure to respond to faults and load requirements? While MMS is a no-brainer, it’s not going to plug into your infrastructure code. You can roll your own integration using MongoDB’s handy exposure of its internals via database commands, and for replication, the local database. For example, you can check on replica set lag in Python like so:

    import pymongo
    # three mongods running on my laptop
    c = pymongo.MongoReplicaSetClient(
        'Kusanagi.local:29017,Kusanagi.local:29018,Kusanagi.local:29019',
        replicaSet='test'
    )
    
    rs_status = c.admin.command('replSetGetStatus')
    
    lag_threshold = 120 # up to two minutes of replica lag is ok for this example
    primary_optime = [ member['optime'].as_datetime()
        for member in rs_status['members'] if member['state'] == 1 ][0]
    secondary_optimes = [ member['optime'].as_datetime()
        for member in rs_status['members'] if member['state'] == 2 ]
    for secondary_optime in secondary_optimes:
        if ( (primary_optime - secondary_optime).total_seconds > lag_threshold):
            # do stuff

    Provisioning MongoDB instances programmatically on Amazon EC2 is easy with the official AMIs, but automating MongoDB infrastructure goes beyond that. Learn to use the database commands to configure replica sets, because you can script joining new instances to a set. If you use sharding, you can update tag ranges for sharded clusters to migrate chunks to shards specifically provisioned to warehouse data.

    Disaster recovery to be robust and automated.

    There are numerous ways to back up MongoDB, and the one you pick should be appropriate for your deploy. So read through your options in the backups section of the MongoDB Manual. You should probably read that section twice.

    To aid in release management.

    By being schema-free, MongoDB frees enterprises from the hassles of schema alterations and their attendant maintenance windows. Instead of altering a user table to include a new column for “birthplace”, a new release of your application will just begin to write the user document with that attribute included. Naturally, your user profile rendering will not assume this value is set and throw an exception, it will just not display “birthplace”. This does not excuse you from change management! In a DevOps shop, everything about monitoring that applies to production applies to your integration environment, which I sincerely hope is continuous. Configure all the monitors you’d have in production, and alert developers when metrics go out of range.

    Closing Thoughts

    In a DevOps culture, admins read code, developers plan infrastructure, and they both attend the same planning meetings. Engineers who work with MongoDB, both in operations and development, should read the WHOLE manual. If your developers read the development section and your admins read the administration section, you’re really only doing Dev and Ops.

    Example Code – Tags

    Tagging an instance of a replica set looks like this in the MongoDB shell:

    test:PRIMARY> config = rs.config()
    {
        "_id" : "test",
        "version" : 2,
        "members" : [
            {
                "_id" : 0,
                "host" : "Kusanagi.local:29017"
            },
            {
                "_id" : 1,
                "host" : "Kusanagi.local:29018"
            },
            {
                "_id" : 2,
                "host" : "Kusanagi.local:29019"
            }
        ]
    }
    test:PRIMARY> config.members[0].tags = { "use": "production" }
    { "use" : "production" }
    test:PRIMARY> config.members[1].tags = { "use": "reporting" }
    { "use" : "reporting" }
    test:PRIMARY> config.members[2].tags = { "use": "production" }
    { "use" : "production" }
    test:PRIMARY> rs.reconfig(config)
    Fri Mar  7 18:35:25.040 DBClientCursor::init call() failed
    Fri Mar  7 18:35:25.042 trying reconnect to 127.0.0.1:29017
    Fri Mar  7 18:35:25.042 reconnect 127.0.0.1:29017 ok
    reconnected to server after rs command (which is normal)

    Here’s Ruby code, assuming the same config:

    require 'mongo'
    
    # I'm running 3 mongods on my laptop
    rset = Mongo::MongoReplicaSetClient.new(["Kusanagi.local:29017",
                                            "Kusanagi.local:29018",
                                            "Kusanagi.local:29019"])
    
    # using the local db to get current config
    config = rset['local']['system.replset'].find_one() 
    admin_db = rset['admin']
    config['members'][0]['tags'] = { "use" => "production" }
    config['version'] += 1  # mongod avoids reconfig conflicts by insisting on an increasing version value
    verify_version = config['version']
    begin
        admin_db.command({ 'replSetReconfig' => config })
    rescue Mongo::ConnectionFailure # expect your connection to close during this operation
        actual_version = rset['local']['system.replset'].find_one()['version']
        raise unless actual_version == verify_version
    end

    Specifying tag sets only applies to reads from secondaries (since there is only one primary to choose from). In Ruby, it looks like this:

    rset = Mongo::MongoReplicaSetClient.new(["Kusanagi.local:29017",
                    "Kusanagi.local:29018", "Kusanagi.local:29019"])
    analytics = rset['analytics']  # say we have an 'analytics' DB
    cursor = analytics['page_views'].find({'page' => 'home'},
                                            :read => :secondary,
                                            :tag_sets => {:use => 'reporting'})

    This query specifies, with the :read option, that only secondaries should answer, and with the :tag_sets option, that only secondaries tagged with 'use': 'production' can be used. If I were to shut down members[0] (Kusanagi.local:29017) while it was primary, and members[1] (Kusanagi.local:29018) became primary, the above query would fail, because as primary it’s no longer eligible to answer queries directed at secondaries, even though member 1 is tagged as use: 'production'. This is exactly what you want, to keep your reporting queries from hosing your production instance. After taking stock of the situation, you might decide to assign 'use': 'reporting' to member 3, and the above query would then again work. Note that the MongoReplicaSetClients created by the Ruby driver do not by default refresh replica set state (as of v1.9.2), they use the config that was present when the connection was established (this is not the case for all drivers, make sure you determine your driver’s behavior). This means that if you reassign tag values, existing connections will not notice the change. If I were to change the tags for member 1 to 'use': 'not reporting', the above query would not fail, it would route the query right to member 1. So if you are using tagging, and Ruby, instantiate your client with the refresh_mode option:

    rset = Mongo::MongoReplicaSetClient.new(["Kusanagi.local:29017",
                "Kusanagi.local:29018", "Kusanagi.local:29019"],
                :refresh_mode => :sync)

    See the MongoReplicaSetClient documentation for details. The Python driver handles this by launching a background process to monitor Replica Set health and config changes, but the API does not document any means to configure its polling interval.